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SciPy library main repository

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The fundamental package for scientific computing with Python.

scikit-learn: machine learning in Python

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Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

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Tensors and Dynamic neural networks in Python with strong GPU acceleration

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An Open Source Machine Learning Framework for Everyone

matplotlib: plotting with Python

Quick Overview

SciPy is a Python-based ecosystem of open-source software for mathematics, science, and engineering. It builds on top of NumPy and provides additional functionality for optimization, linear algebra, integration, interpolation, and other scientific and engineering applications. SciPy is widely used in academic and commercial settings for scientific computing and data analysis.

Pros

  • Comprehensive suite of scientific and engineering tools
  • Well-documented and actively maintained
  • Integrates seamlessly with other scientific Python libraries
  • Efficient implementations of many algorithms

Cons

  • Can be complex for beginners due to its extensive functionality
  • Some modules may have slower performance compared to specialized libraries
  • Installation can be challenging on some systems due to dependencies
  • Occasional API changes between versions may require code updates

Code Examples

  1. Solving a system of linear equations:
from scipy import linalg
import numpy as np

A = np.array([[1, 2], [3, 4]])
b = np.array([5, 6])
x = linalg.solve(A, b)
print(x)  # Output: [-4.  4.5]
  1. Finding the minimum of a function:
from scipy import optimize

def f(x):
    return x**2 + 10*np.sin(x)

result = optimize.minimize_scalar(f)
print(result.x)  # Output: -1.3047
  1. Performing numerical integration:
from scipy import integrate
import numpy as np

def f(x):
    return np.sin(x)

result, error = integrate.quad(f, 0, np.pi)
print(f"Integral: {result}, Error: {error}")
# Output: Integral: 2.0, Error: 2.220446049250313e-14

Getting Started

To get started with SciPy, first install it using pip:

pip install scipy

Then, import the modules you need in your Python script:

import numpy as np
from scipy import optimize, linalg, integrate

# Your code using SciPy functions goes here

For more detailed information and tutorials, visit the official SciPy documentation at https://docs.scipy.org/doc/scipy/.

Competitor Comparisons

27,792

The fundamental package for scientific computing with Python.

Pros of NumPy

  • Faster array operations and lower memory usage
  • Simpler API for basic numerical computing tasks
  • More widely used and integrated into other libraries

Cons of NumPy

  • Limited scope compared to SciPy's broader scientific computing capabilities
  • Fewer advanced mathematical functions and algorithms
  • Less support for specialized scientific domains (e.g., signal processing, optimization)

Code Comparison

NumPy example:

import numpy as np

a = np.array([1, 2, 3])
b = np.array([4, 5, 6])
c = np.dot(a, b)

SciPy example:

from scipy import linalg

A = np.array([[1, 2], [3, 4]])
B = np.array([[5, 6], [7, 8]])
C = linalg.solve(A, B)

NumPy focuses on array operations and basic linear algebra, while SciPy builds upon NumPy to provide more advanced scientific computing functionality. NumPy is often sufficient for simpler numerical tasks, but SciPy offers a wider range of tools for complex scientific and engineering applications.

scikit-learn: machine learning in Python

Pros of scikit-learn

  • More focused on machine learning algorithms and tools
  • Higher-level API, easier to use for beginners
  • Extensive documentation and examples

Cons of scikit-learn

  • Less comprehensive in terms of general scientific computing
  • Slower performance for some operations compared to SciPy

Code Comparison

SciPy (Linear regression):

from scipy import stats
slope, intercept, r_value, p_value, std_err = stats.linregress(x, y)

scikit-learn (Linear regression):

from sklearn.linear_model import LinearRegression
model = LinearRegression().fit(X, y)
coefficients = model.coef_
intercept = model.intercept_

Summary

SciPy is a more comprehensive scientific computing library, offering a wide range of mathematical tools and algorithms. It's better suited for low-level scientific computing tasks and provides more flexibility for advanced users.

scikit-learn, on the other hand, is specifically designed for machine learning tasks. It offers a more user-friendly API and is easier to use for beginners in data science and machine learning. However, it may not be as versatile for general scientific computing tasks as SciPy.

Both libraries are valuable tools in the Python ecosystem, often used together in data science and machine learning projects. The choice between them depends on the specific requirements of the project and the user's familiarity with each library.

43,524

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Pros of pandas

  • Specialized for data manipulation and analysis with powerful DataFrame structure
  • Extensive data import/export capabilities for various file formats
  • Intuitive API for data cleaning, merging, and reshaping

Cons of pandas

  • Steeper learning curve for beginners compared to SciPy's simpler array operations
  • Higher memory usage, especially for large datasets
  • Limited support for advanced scientific computing and optimization tasks

Code Comparison

pandas:

import pandas as pd

df = pd.read_csv('data.csv')
result = df.groupby('category').mean()

SciPy:

import numpy as np
from scipy import stats

data = np.loadtxt('data.csv', delimiter=',')
result = stats.describe(data)

pandas excels at data manipulation and analysis with its DataFrame structure, while SciPy focuses on scientific computing and optimization. pandas offers more intuitive data handling and import/export capabilities, but SciPy provides a broader range of scientific functions and algorithms. Choose pandas for data analysis tasks and SciPy for scientific computing and numerical operations.

85,015

Tensors and Dynamic neural networks in Python with strong GPU acceleration

Pros of PyTorch

  • Designed specifically for deep learning and neural networks
  • Dynamic computational graphs allow for more flexible model architectures
  • Seamless GPU acceleration and distributed computing support

Cons of PyTorch

  • Narrower focus on machine learning compared to SciPy's broader scientific computing scope
  • Steeper learning curve for those not familiar with deep learning concepts
  • Smaller ecosystem of scientific computing tools outside of machine learning

Code Comparison

PyTorch example (neural network):

import torch.nn as nn

model = nn.Sequential(
    nn.Linear(10, 20),
    nn.ReLU(),
    nn.Linear(20, 1)
)

SciPy example (optimization):

from scipy.optimize import minimize

def objective(x):
    return x**2 + x + 2

result = minimize(objective, x0=0)

PyTorch focuses on building and training neural networks, while SciPy provides a wide range of scientific computing tools. PyTorch's code is more oriented towards defining model architectures and working with tensors, whereas SciPy's code typically involves mathematical functions and algorithms for various scientific disciplines.

186,879

An Open Source Machine Learning Framework for Everyone

Pros of TensorFlow

  • Specialized for deep learning and neural networks
  • Supports distributed computing and GPU acceleration
  • Extensive ecosystem with tools like TensorBoard for visualization

Cons of TensorFlow

  • Steeper learning curve compared to SciPy
  • More complex setup and configuration
  • Focused primarily on machine learning, less versatile for general scientific computing

Code Comparison

SciPy example (solving a linear equation):

from scipy import linalg
A = [[1, 2], [3, 4]]
b = [5, 6]
x = linalg.solve(A, b)

TensorFlow example (simple neural network):

import tensorflow as tf
model = tf.keras.Sequential([
    tf.keras.layers.Dense(64, activation='relu'),
    tf.keras.layers.Dense(10, activation='softmax')
])

Summary

SciPy is a general-purpose scientific computing library, offering a wide range of mathematical tools and algorithms. It's easier to learn and use for basic scientific computing tasks. TensorFlow, on the other hand, is specialized for machine learning, particularly deep learning. It offers powerful tools for building and training neural networks but has a steeper learning curve and is less versatile for general scientific computing tasks.

matplotlib: plotting with Python

Pros of Matplotlib

  • More focused on data visualization and plotting
  • Extensive documentation and examples for various plot types
  • Highly customizable with fine-grained control over plot elements

Cons of Matplotlib

  • Steeper learning curve for complex visualizations
  • Less efficient for large-scale numerical computations
  • More verbose code required for basic plots compared to some alternatives

Code Comparison

Matplotlib example:

import matplotlib.pyplot as plt
import numpy as np

x = np.linspace(0, 10, 100)
plt.plot(x, np.sin(x))
plt.show()

SciPy example:

from scipy import optimize
import numpy as np

def f(x):
    return x**2 + 5*np.sin(x)

result = optimize.minimize(f, x0=0)
print(result.x)

Matplotlib focuses on creating a plot, while SciPy demonstrates numerical optimization. SciPy is more suited for scientific computing tasks, while Matplotlib excels in data visualization. Both libraries are complementary and often used together in data science workflows.

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SciPy (pronounced "Sigh Pie") is an open-source software for mathematics, science, and engineering. It includes modules for statistics, optimization, integration, linear algebra, Fourier transforms, signal and image processing, ODE solvers, and more.

SciPy is built to work with NumPy arrays, and provides many user-friendly and efficient numerical routines, such as routines for numerical integration and optimization. Together, they run on all popular operating systems, are quick to install, and are free of charge. NumPy and SciPy are easy to use, but powerful enough to be depended upon by some of the world's leading scientists and engineers. If you need to manipulate numbers on a computer and display or publish the results, give SciPy a try!

For the installation instructions, see our install guide <https://scipy.org/install/>__.

Call for Contributions

We appreciate and welcome contributions. Small improvements or fixes are always appreciated; issues labeled as "good first issue" may be a good starting point. Have a look at our contributing guide <https://scipy.github.io/devdocs/dev/index.html>__.

Writing code isn’t the only way to contribute to SciPy. You can also:

  • review pull requests
  • triage issues
  • develop tutorials, presentations, and other educational materials
  • maintain and improve our website <https://github.com/scipy/scipy.org>__
  • develop graphic design for our brand assets and promotional materials
  • help with outreach and onboard new contributors
  • write grant proposals and help with other fundraising efforts

If you’re unsure where to start or how your skills fit in, reach out! You can ask on the forum <https://discuss.scientific-python.org/c/contributor/scipy>__ or here, on GitHub, by leaving a comment on a relevant issue that is already open.

If you are new to contributing to open source, this guide <https://opensource.guide/how-to-contribute/>__ helps explain why, what, and how to get involved.