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dplyr: A grammar of data manipulation

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Quick Overview

dplyr is a powerful R package for data manipulation and transformation. It provides a set of intuitive and consistent functions that make working with data frames and tibbles more efficient and readable. dplyr is part of the tidyverse ecosystem, which is designed to make data science workflows in R more coherent and streamlined.

Pros

  • Intuitive and consistent syntax for data manipulation tasks
  • Efficient performance, especially for large datasets
  • Seamless integration with other tidyverse packages
  • Extensive documentation and community support

Cons

  • Learning curve for users coming from base R or other data manipulation paradigms
  • Some functions may have unexpected behavior with certain data types
  • Occasional breaking changes between major versions
  • Dependency on the tidyverse ecosystem, which may not be ideal for all projects

Code Examples

  1. Basic data manipulation:
library(dplyr)

# Filter rows and select columns
mtcars %>%
  filter(mpg > 20) %>%
  select(mpg, cyl, wt)
  1. Grouping and summarizing data:
library(dplyr)

# Group by cylinder and calculate mean mpg
mtcars %>%
  group_by(cyl) %>%
  summarize(mean_mpg = mean(mpg))
  1. Joining data frames:
library(dplyr)

# Create sample data frames
df1 <- tibble(id = 1:3, value = c("a", "b", "c"))
df2 <- tibble(id = 2:4, score = c(80, 90, 100))

# Perform a left join
left_join(df1, df2, by = "id")

Getting Started

To get started with dplyr, follow these steps:

  1. Install the package:
install.packages("dplyr")
  1. Load the library:
library(dplyr)
  1. Use dplyr functions with the pipe operator:
mtcars %>%
  filter(mpg > 20) %>%
  select(mpg, cyl, wt) %>%
  arrange(desc(mpg))

This example filters cars with mpg > 20, selects specific columns, and sorts by mpg in descending order. Explore more functions like mutate(), summarize(), and group_by() to unlock the full potential of dplyr for your data manipulation tasks.

Competitor Comparisons

43,524

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Pros of pandas

  • More comprehensive data manipulation library with extensive functionality
  • Better performance for large datasets due to optimized C extensions
  • Wider adoption in the data science and machine learning communities

Cons of pandas

  • Steeper learning curve due to more complex API
  • Less consistent syntax across different operations
  • Slower development cycle compared to dplyr

Code Comparison

pandas:

import pandas as pd

df = pd.read_csv('data.csv')
result = df[df['column'] > 5].groupby('category').agg({'value': 'mean'})

dplyr:

library(dplyr)

df <- read_csv('data.csv')
result <- df %>%
  filter(column > 5) %>%
  group_by(category) %>%
  summarize(mean_value = mean(value))

Both libraries offer powerful data manipulation capabilities, but dplyr focuses on a more intuitive and consistent syntax using the pipe operator, while pandas provides a broader range of functionality at the cost of a more complex API. The choice between them often depends on the user's programming language preference (R vs Python) and specific project requirements.

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Pros of Spark

  • Designed for big data processing and distributed computing
  • Supports multiple programming languages (Scala, Java, Python, R)
  • Offers in-memory processing for faster performance

Cons of Spark

  • Steeper learning curve and more complex setup
  • Higher resource requirements for small-scale data processing
  • Less intuitive for simple data manipulation tasks

Code Comparison

dplyr:

library(dplyr)
data %>%
  filter(column1 > 10) %>%
  group_by(column2) %>%
  summarize(mean_value = mean(column3))

Spark:

from pyspark.sql import SparkSession
from pyspark.sql.functions import mean

spark = SparkSession.builder.appName("example").getOrCreate()
data = spark.read.csv("data.csv", header=True, inferSchema=True)
result = data.filter(data.column1 > 10) \
             .groupBy("column2") \
             .agg(mean("column3").alias("mean_value"))

Summary

dplyr is more user-friendly for small to medium-sized datasets and simple data manipulation tasks, while Spark excels in processing large-scale data and distributed computing environments. dplyr offers a more intuitive syntax for R users, whereas Spark provides flexibility across multiple programming languages and advanced big data processing capabilities.

R's data.table package extends data.frame:

Pros of data.table

  • Faster performance, especially for large datasets
  • More memory-efficient operations
  • Concise syntax for complex data manipulations

Cons of data.table

  • Steeper learning curve due to unique syntax
  • Less intuitive for beginners compared to dplyr's verb-based approach
  • Fewer built-in functions for common data analysis tasks

Code Comparison

dplyr:

library(dplyr)
result <- mtcars %>%
  group_by(cyl) %>%
  summarize(avg_mpg = mean(mpg))

data.table:

library(data.table)
dt <- as.data.table(mtcars)
result <- dt[, .(avg_mpg = mean(mpg)), by = cyl]

Both dplyr and data.table are powerful R packages for data manipulation. dplyr offers a more intuitive, verb-based syntax that's easier for beginners to grasp, while data.table provides superior performance for large datasets and more concise syntax for complex operations. The choice between them often depends on the specific needs of the project, dataset size, and the user's familiarity with each package's syntax.

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The interactive graphing library for Python :sparkles: This project now includes Plotly Express!

Pros of plotly.py

  • Interactive and dynamic visualizations
  • Supports a wide range of chart types
  • Can be used in web applications and Jupyter notebooks

Cons of plotly.py

  • Steeper learning curve for beginners
  • Slower performance for large datasets
  • Less integrated with data manipulation tasks

Code Comparison

dplyr:

library(dplyr)
mtcars %>%
  group_by(cyl) %>%
  summarize(avg_mpg = mean(mpg))

plotly.py:

import plotly.express as px
import pandas as pd

df = pd.read_csv('mtcars.csv')
fig = px.scatter(df, x='mpg', y='wt', color='cyl')
fig.show()

Key Differences

  • dplyr focuses on data manipulation, while plotly.py specializes in visualization
  • dplyr is part of the tidyverse ecosystem, offering seamless integration with other R packages
  • plotly.py provides interactive plots out-of-the-box, whereas dplyr requires additional libraries for visualization

Use Cases

  • dplyr: Ideal for data cleaning, transformation, and analysis tasks
  • plotly.py: Best suited for creating interactive and shareable visualizations, especially for web applications
14,426

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

Pros of Arrow

  • Designed for efficient processing of large-scale data across multiple languages and platforms
  • Supports in-memory and on-disk data processing with optimized performance
  • Provides zero-copy reads and interprocess communication for faster data transfer

Cons of Arrow

  • Steeper learning curve compared to dplyr's intuitive syntax
  • Less extensive ecosystem of helper functions and extensions
  • May be overkill for smaller datasets or simpler data manipulation tasks

Code Comparison

dplyr:

library(dplyr)
data %>%
  filter(column1 > 10) %>%
  group_by(column2) %>%
  summarize(mean_value = mean(column3))

Arrow:

library(arrow)
open_dataset("path/to/data") %>%
  filter(column1 > 10) %>%
  group_by(column2) %>%
  summarize(mean_value = mean(column3)) %>%
  collect()

The Arrow code is similar to dplyr but operates on larger datasets efficiently. The collect() function is used to materialize the results in memory.

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README

dplyr

CRAN
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coverage

Overview

dplyr is a grammar of data manipulation, providing a consistent set of verbs that help you solve the most common data manipulation challenges:

  • mutate() adds new variables that are functions of existing variables
  • select() picks variables based on their names.
  • filter() picks cases based on their values.
  • summarise() reduces multiple values down to a single summary.
  • arrange() changes the ordering of the rows.

These all combine naturally with group_by() which allows you to perform any operation “by group”. You can learn more about them in vignette("dplyr"). As well as these single-table verbs, dplyr also provides a variety of two-table verbs, which you can learn about in vignette("two-table").

If you are new to dplyr, the best place to start is the data transformation chapter in R for Data Science.

Backends

In addition to data frames/tibbles, dplyr makes working with other computational backends accessible and efficient. Below is a list of alternative backends:

  • arrow for larger-than-memory datasets, including on remote cloud storage like AWS S3, using the Apache Arrow C++ engine, Acero.

  • dtplyr for large, in-memory datasets. Translates your dplyr code to high performance data.table code.

  • dbplyr for data stored in a relational database. Translates your dplyr code to SQL.

  • duckplyr for using duckdb on large, in-memory datasets with zero extra copies. Translates your dplyr code to high performance duckdb queries with an automatic R fallback when translation isn’t possible.

  • duckdb for large datasets that are still small enough to fit on your computer.

  • sparklyr for very large datasets stored in Apache Spark.

Installation

# The easiest way to get dplyr is to install the whole tidyverse:
install.packages("tidyverse")

# Alternatively, install just dplyr:
install.packages("dplyr")

Development version

To get a bug fix or to use a feature from the development version, you can install the development version of dplyr from GitHub.

# install.packages("pak")
pak::pak("tidyverse/dplyr")

Cheat Sheet

Usage

library(dplyr)

starwars %>% 
  filter(species == "Droid")
#> # A tibble: 6 × 14
#>   name   height  mass hair_color skin_color  eye_color birth_year sex   gender  
#>   <chr>   <int> <dbl> <chr>      <chr>       <chr>          <dbl> <chr> <chr>   
#> 1 C-3PO     167    75 <NA>       gold        yellow           112 none  masculi…
#> 2 R2-D2      96    32 <NA>       white, blue red               33 none  masculi…
#> 3 R5-D4      97    32 <NA>       white, red  red               NA none  masculi…
#> 4 IG-88     200   140 none       metal       red               15 none  masculi…
#> 5 R4-P17     96    NA none       silver, red red, blue         NA none  feminine
#> # ℹ 1 more row
#> # ℹ 5 more variables: homeworld <chr>, species <chr>, films <list>,
#> #   vehicles <list>, starships <list>

starwars %>% 
  select(name, ends_with("color"))
#> # A tibble: 87 × 4
#>   name           hair_color skin_color  eye_color
#>   <chr>          <chr>      <chr>       <chr>    
#> 1 Luke Skywalker blond      fair        blue     
#> 2 C-3PO          <NA>       gold        yellow   
#> 3 R2-D2          <NA>       white, blue red      
#> 4 Darth Vader    none       white       yellow   
#> 5 Leia Organa    brown      light       brown    
#> # ℹ 82 more rows

starwars %>% 
  mutate(name, bmi = mass / ((height / 100)  ^ 2)) %>%
  select(name:mass, bmi)
#> # A tibble: 87 × 4
#>   name           height  mass   bmi
#>   <chr>           <int> <dbl> <dbl>
#> 1 Luke Skywalker    172    77  26.0
#> 2 C-3PO             167    75  26.9
#> 3 R2-D2              96    32  34.7
#> 4 Darth Vader       202   136  33.3
#> 5 Leia Organa       150    49  21.8
#> # ℹ 82 more rows

starwars %>% 
  arrange(desc(mass))
#> # A tibble: 87 × 14
#>   name      height  mass hair_color skin_color eye_color birth_year sex   gender
#>   <chr>      <int> <dbl> <chr>      <chr>      <chr>          <dbl> <chr> <chr> 
#> 1 Jabba De…    175  1358 <NA>       green-tan… orange         600   herm… mascu…
#> 2 Grievous     216   159 none       brown, wh… green, y…       NA   male  mascu…
#> 3 IG-88        200   140 none       metal      red             15   none  mascu…
#> 4 Darth Va…    202   136 none       white      yellow          41.9 male  mascu…
#> 5 Tarfful      234   136 brown      brown      blue            NA   male  mascu…
#> # ℹ 82 more rows
#> # ℹ 5 more variables: homeworld <chr>, species <chr>, films <list>,
#> #   vehicles <list>, starships <list>

starwars %>%
  group_by(species) %>%
  summarise(
    n = n(),
    mass = mean(mass, na.rm = TRUE)
  ) %>%
  filter(
    n > 1,
    mass > 50
  )
#> # A tibble: 9 × 3
#>   species      n  mass
#>   <chr>    <int> <dbl>
#> 1 Droid        6  69.8
#> 2 Gungan       3  74  
#> 3 Human       35  81.3
#> 4 Kaminoan     2  88  
#> 5 Mirialan     2  53.1
#> # ℹ 4 more rows

Getting help

If you encounter a clear bug, please file an issue with a minimal reproducible example on GitHub. For questions and other discussion, please use forum.posit.co.

Code of conduct

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.